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| BIYL5890 | Systematics of Bacteria | 3+0+0 | ECTS:7.5 | | Year / Semester | Spring Semester | | Level of Course | Second Cycle | | Status | Elective | | Department | DEPARTMENT of BIOLOGY | | Prerequisites and co-requisites | None | | Mode of Delivery | | | Contact Hours | 14 weeks - 3 hours of lectures per week | | Lecturer | Prof. Dr. Sabriye ÇANAKÇI | | Co-Lecturer | Prof. Dr. Ali Osman BELDUZ | | Language of instruction | Turkish | | Professional practise ( internship ) | None | | | | The aim of the course: | | To inform students about bacterial systematic, the classic and the molecular methods in classification and identification |
| Programme Outcomes | CTPO | TOA | | Upon successful completion of the course, the students will be able to : | | | | PO - 1 : | Describe the classical methods in bacterial systematic | 2,4,7 | 1 | | PO - 2 : | Explain the importance of morfological, phyological and biochemical features in bacterial systematic | 2,4,7 | 1,5, | | PO - 3 : | Explain the importance of DNA base composition | 2,4,7 | 1, | | PO - 4 : | Constitute phylogenetic trees | 2,4,7 | 1,5, | | PO - 5 : | Explain the use of the polymerase chain reaction in bacterial systematics | 2,4,7 | 1, | | CTPO : Contribution to programme outcomes, TOA :Type of assessment (1: written exam, 2: Oral exam, 3: Homework assignment, 4: Laboratory exercise/exam, 5: Seminar / presentation, 6: Term paper), PO : Learning Outcome | | |
| The use of the classical systematics methods in bacterial classification, nomenclature, and identification the use of detailed coverage of molecular systematics including relevant aspects of nucleic acid sequences, the construction of phylogenetic trees,typing of bacteria by restriction fragment length polymorphisms, DNA hybridization probes and the use of the polymerase chain reaction in bacterial systematics |
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| Course Syllabus | | Week | Subject | Related Notes / Files | | Week 1 | The classical systematics methods in bacterial classification, nomenclature, and identification | | | Week 2 | Morphological and physiological features in bacterial classification and identification | | | Week 3 | The use of phenotypical methods in bacterial systematic | | | Week 4 | Usage ares of chemotaxonomic and biochemical tests in bacteria systematic | | | Week 5 | The use of detailed coverage of molecular systematics in bacretial classification and identification | | | Week 6 | Nucleic acid sequences data in bacteria systematic | | | Week 7 | The importance of DNA base composition in systematic | | | Week 8 | The construction of phylogenetic trees | | | Week 9 | Mid-term exam | | | Week 10 | The construction of phylogenetic trees | | | Week 11 | Student Seminar | | | Week 12 | Student Seminar | | | Week 13 | Typing of bacteria by restriction fragment length polymorphisms | | | Week 14 | DNA hybridization probes | | | Week 15 | The use of the polymerase chain reaction in bacterial systematics | | | Week 16 | End-of-term exam | | | |
| 1 | Logan, A.N.,2009, Bacterial Systematics,Blackwell Scientific Publications | | | |
| 1 | Ramos-Cormanzana, A.,Tindall, B.J.,1994, Bacterial Diversity and Systematics ,Springer-Verlag Publishing,New York | | | 2 | Madigan, M.T., Martinko, J.M., Çeviri Editötü: Çökmüş, C. 2017, Brook Mikroorganizmaların Biyolojisi, Palme Yayıncılık, Ankara | | | |
| Method of Assessment | | Type of assessment | Week No | Date | Duration (hours) | Weight (%) | | Mid-term exam | 9 | 20/04/2024 | 1 | 30 | | Presentation | 12 | 11/05/2024 | 1 | 20 | | End-of-term exam | 16 | 14/06/2024 | 1 | 50 | | |
| Student Work Load and its Distribution | | Type of work | Duration (hours pw) | No of weeks / Number of activity | Hours in total per term | | Yüz yüze eğitim | 3 | 14 | 42 | | Sınıf dışı çalışma | 3 | 14 | 42 | | Arasınav için hazırlık | 24 | 1 | 24 | | Arasınav | 1 | 1 | 1 | | Ödev | 11.5 | 2 | 23 | | Dönem sonu sınavı için hazırlık | 30 | 2 | 60 | | Dönem sonu sınavı | 1.5 | 1 | 1.5 | | Diğer 1 | 31.5 | 1 | 31.5 | | Total work load | | | 225 |
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